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System Hardware Specifications

The AU HPC System provides high-speed parallel/distributed data processing and research-dedicated storage with high input-output capabilities. Hardware includes:

  • blade chassis (Dell PowerEdge M1000E)
  • 16 Dell PowerEdge M630 blade servers each housing 2 Intel Xeon CPU E5-2650 v4 @ 2.20GHz processors (12 cores per socket), 128 GB of memory, and a 800 GB SSD
  • Dell PowerEdge R730 server with Nvidia Tesla K80 GPU, 128 GB of RAM. 800 GB SSD
  • Infiniband interconnect
  • 30 TB Isilon Network Attached Storage cluster

Zorro Software

C++
http://www.cplusplus.com/

Canopy Python Distributed
https://www.enthought.com/products/canopy/

Fortran

Interproscan

Java

MrBayes
http://mrbayes.csit.fsu.edu/

MrBayes Manual (3.1, PDF)

Muscle
http://www.drive5.com/muscle/
Muscle User Guide
(3.8, PDF)

Octave
http://www.gnu.org/software/octave/

OpenBUGS (Bayesian inference Using Gibbs Sampling)
http://www.openbugs.info/w/

Perl
http://www.perl.org/

Platanus

R Project
http://www.r-project.org/
R Intro (Version 2.13.0, PDF)

Reapr

Load Sharing Facility (LSF)
LSF AU User Guide (PDF)
LSF Commands (PDF)
LSF Submitting Jobs (PDF) 

Matlab

  • Simulink
  • Symbolic Math Toolbox
  • Bioinformatics Toolbox
  • Control System Toolbox
  • Curve Fitting Toolbox
  • Data Acquisition Toolbox
  • DSP System Toolbox
  • Image Processing Toolbox
  • Instrument Control Toolbox
  • Optimization Toolbox
  • Parallel Computing Toolbox
  • Signal Processing Toolbox
  • Simscape
  • Simscape Multibody
  • Simulink Control Design
  • Stateflow
  • Statistics & Machine Learning Toolbox
  • Partial Differential Equation Toolbox<
  • Wavelet Toolbox
  • Financial Toolbox
  • Econometrics Toolbox
  • Mapping Toolbox
  • Neural Network Toolbox
  • Unlimited 32 worker MDCS license

Matlab Distributed
http://www.mathworks.com/products/distriben/
Matlab AU User Guide
(PDF)

Mathematica
Please (free) installation/licensing via CAS at
Mathematica Software

Stata MP
http://www.stata.com/statamp/